PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041614-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 570aa    MW: 62530.7 Da    PI: 7.1394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041614-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10484545655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C..............TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.as...........kapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l+P+ +               ++ ++ a++L +AveY+ksLq
  PSME_00041614-RA 484 SIAERVRRTRISERMRKLQDLVPNsDKasnrdaflvtyDSIQQTVNIADMLDEAVEYVKSLQ 545
                       689*********************666**********8888888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.44478544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-12481555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-9482549No hitNo description
Gene3DG3DSA:4.10.280.102.7E-13483554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-10484550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-7484545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MRFSMSFDKM LNSRAQAISP GLNIPSLSVG HSEANGIQMS FSQYSMDSEK MPQMQQQTNN  60
VDFMDLDYKP SVCNVSQADG VMALTERGSS NNFQGPAGLM RYHSAPSSFF SSLGEEENNN  120
IISEYFSGSS SNSLQSNTKP LQQNQSSVLS FHLRENEPAK HLGERNEYLK RNARQLPSLK  180
RSAGNVARED LSKHHPLDAI LENVPDVSQD SFGTSQMSLM NHVQVSEPNG QHIDSSYQMN  240
SVCCNTLDQS GGRMSNAYSS TSKNTLIRHS SSPAGLLSEL VAEGRGTFES GYAEGTVRNS  300
IGVGNSCGDI ITPNKVQRQM NCLRQNSSPP GLLSQLPVDM RVPEMVDRLN MAMVGSSAEN  360
QAGSSSDDGS LGSGNAGQGY ISKFSVKSWD DGAMTPGNFA GMQNGTNFTA RKRAKELDMK  420
MMQGLNNSDH QKLEAGIRGA SVLTNHPYNL PRSTSSELAM EEFLQDAVPC KVRAKRGCAT  480
HPRSIAERVR RTRISERMRK LQDLVPNSDK ASNRDAFLVT YDSIQQTVNI ADMLDEAVEY  540
VKSLQKQVQE LTENRGKCTC THKPDCAYKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1038080.0AF103808.1 Pinus taeda helix-loop-helix protein 1A (HLH1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9SQ790.0Q9SQ79_PINTA; Helix-loop-helix protein 1A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-40bHLH family protein