PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041689-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 324aa    MW: 37066 Da    PI: 8.5136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041689-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.4e-27170228159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYG K  k++++prsYY C+ ++C vkk v+r+a+d+ +v++tY g+Hnh+
  PSME_00041689-RA 170 MKDGYKWRKYGTKFLKNNPNPRSYYICSGKSCDVKKTVQRDAQDNGIVITTYLGKHNHQ 228
                       58********************************************************8 PP
2WRKY49.67.8e-16269310243
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversae 43 
                       + gy+WrKYG K  k++++ rsYY C+ ++  vkk ver+a+
  PSME_00041689-RA 269 KEGYKWRKYGNKFLKNNPNLRSYYICSENSRDVKKTVEREAQ 310
                       689************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-29159230IPR003657WRKY domain
SuperFamilySSF1182902.62E-25162230IPR003657WRKY domain
PROSITE profilePS5081128.506165230IPR003657WRKY domain
SMARTSM007742.6E-27170229IPR003657WRKY domain
PfamPF031061.1E-21171228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-16257311IPR003657WRKY domain
SuperFamilySSF1182902.22E-13260310IPR003657WRKY domain
PROSITE profilePS5081116.857263307IPR003657WRKY domain
SMARTSM007741.6E-7268317IPR003657WRKY domain
PfamPF031062.2E-11270310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
SSQSVFINAA ARRCPPFINI FIREITEAVF AMANFEPRID HFQEANKVFN NGQIQLLQEA  60
SCSQHMNQAA KAVEISDFLV SEDELENSYK SDDAGVQDYN YNTAMSGPSI QGDNARCFTN  120
NLPCIPAVYL DQNSTGIQTH QVPEIIPKQE KKAEHAVKYA FLTRSEIDIM KDGYKWRKYG  180
TKFLKNNPNP RSYYICSGKS CDVKKTVQRD AQDNGIVITT YLGKHNHQSP TVFYCDIGKL  240
ETLQASAKKK AEEALKYAFL TRSEIDILKE GYKWRKYGNK FLKNNPNLRS YYICSENSRD  300
VKKTVEREAQ VMVMHDIQLV KFTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-221632301077Probable WRKY transcription factor 4
2lex_A3e-221632301077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C92e-37A0A0D6R4C9_ARACU; Uncharacterized protein
STRINGVIT_04s0008g01470.t015e-28(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-27WRKY DNA-binding protein 71