PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041736-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 191aa    MW: 21090 Da    PI: 5.7274
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041736-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-3934132199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk++r+kC+k+Cvlapyfp+++p+kf+ v++l+G+ +v+kll++lp e+r da+ss+vyeA  r rdPv G+vgvi++lq+++++l+++
  PSME_00041736-RA  34 PCAACKIQRKKCTKKCVLAPYFPQDDPQKFRLVQRLYGNVHVIKLLENLPAEKRGDAVSSMVYEASERNRDPVLGCVGVIKDLQNKVAELESQ 126
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       la++++
  PSME_00041736-RA 127 LASTQA 132
                       *99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.30233134IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3834131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTLALSEKTE SAHSNGKMSD VTASIKPEGT SRTPCAACKI QRKKCTKKCV LAPYFPQDDP  60
QKFRLVQRLY GNVHVIKLLE NLPAEKRGDA VSSMVYEASE RNRDPVLGCV GVIKDLQNKV  120
AELESQLAST QAVLANISQQ HANLLTIFNG SYEPSDPNLY CEAPPDSVDT DMSQSLFGYV  180
DNLPLLELFW P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-303312710104LOB family transfactor Ramosa2.1
5ly0_B2e-303312710104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LQR02e-40LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK085e-40LBD11_ARATH; LOB domain-containing protein 11
TrEMBLB8LQI99e-67B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-42LOB domain-containing protein 1