PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041759-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 353aa MW: 38523.5 Da PI: 6.5858

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041759-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	35.6	2.4e-11	32	57	53	78
TT--SS--S-STTTT-------S--- CS SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78 efDe krsCr+rLa+hn+rrrk+q+ PSME_00041759-RA 32 PEFDEVKRSCRKRLADHNRRRRKPQT 57 59*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	9.545	1	55	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.24E-9	31	60	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-5	33	54	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEEYFPYSDF KELGFHSSLL LNGTYFQAGL HPEFDEVKRS CRKRLADHNR RRRKPQTNTI 60 VPAVSSAEAA TALKVEDDDN NVSGSCNNTS RGTVQTSVAA AASPVLRTEA QALLNAMSLP 120 LMLQNTKGSQ MNNNSNTNTN NNSNTTTNNP MLQQPNSQKV PVANQQYVQQ QNGGGHMGPN 180 LSLSSPSVGM SLCNQRQTTA QDYSGMELAL PWLRTTSDYG GSSHRPPPAM DNILHPIISH 240 EKANVEAFSA SSVQNFLPLT GSMSSKELGS SQWMVGSSDS ASSLEAGQQM FSLLEPAEHH 300 NRTEEQAQTA RPVEYLSHRH QGGLNSKEPV DGNPEVKFSD MQNSLRPFGQ SNL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEEYFPYSDF KELGFHSSLL LNGTYFQAGL HPEFDEVKRS CRKRLADHNR RRRKPQTNTI  60
VPAVSSAEAA TALKVEDDDN NVSGSCNNTS RGTVQTSVAA AASPVLRTEA QALLNAMSLP  120
LMLQNTKGSQ MNNNSNTNTN NNSNTTTNNP MLQQPNSQKV PVANQQYVQQ QNGGGHMGPN  180
LSLSSPSVGM SLCNQRQTTA QDYSGMELAL PWLRTTSDYG GSSHRPPPAM DNILHPIISH  240
EKANVEAFSA SSVQNFLPLT GSMSSKELGS SQWMVGSSDS ASSLEAGQQM FSLLEPAEHH  300
NRTEEQAQTA RPVEYLSHRH QGGLNSKEPV DGNPEVKFSD MQNSLRPFGQ SNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	54	KRSCRKRLADHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-08	SBP family protein