PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041849-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 259aa    MW: 28306.6 Da    PI: 7.524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041849-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1756107255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+Wv+eIr p      +++r++lg++ tae Aa+a++aa ++l+g
  PSME_00041849-RA  56 QYRGVRMRS-WGSWVSEIRAP---HhhQKTRIWLGSYSTAEAAARAYDAALLCLRG 107
                       7*****998.**********8...33456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-1855117No hitNo description
PfamPF008471.3E-1056107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3056117IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1956117IPR016177DNA-binding domain
PROSITE profilePS5103222.64256115IPR001471AP2/ERF domain
SMARTSM003801.9E-3256121IPR001471AP2/ERF domain
PRINTSPR003672.0E-95768IPR001471AP2/ERF domain
PRINTSPR003672.0E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVCGSKNSER HPNLLIGYQQ GSYRLLERRE CQVSSHLQPK ADICKASNKS ISGSKQYRGV  60
RMRSWGSWVS EIRAPHHHQK TRIWLGSYST AEAAARAYDA ALLCLRGSSA ALNFPESATT  120
IVHPLQSCQP LLMSPKSIKK VAAAAAAYGS PNPATDFAGS NGVDCAAQSL LQVSLDSNVK  180
IKVGTETMAQ TTNSNGDGSV TQELSWLESP NRDNGHYGYD HQMLSALISS DLSSLSNWVD  240
ECYGEDHHED LCRLWNFST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1555115160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-15561151472Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.16e-26ERF family protein