PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041850-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 248aa    MW: 27364.2 Da    PI: 5.7911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041850-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-174596255
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+Wv+eIr p      +++r++lg++ tae Aa+a++aa ++l+g
  PSME_00041850-RA 45 QYRGVRMRS-WGSWVSEIRAP---HhhQKTRIWLGSYSTAEAAARAYDAALLCLKG 96
                      69****998.**********8...33456************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.4E-3245110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2945106IPR001471AP2/ERF domain
CDDcd000181.24E-1645106No hitNo description
PROSITE profilePS5103222.06245104IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1945106IPR016177DNA-binding domain
PfamPF008473.1E-104696IPR001471AP2/ERF domain
PRINTSPR003671.9E-94657IPR001471AP2/ERF domain
PRINTSPR003671.9E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVCRSKESEG HQNLLMGSQQ HSERRECQVW STACKKSSRG SSSGQYRGVR MRSWGSWVSE  60
IRAPHHHQKT RIWLGSYSTA EAAARAYDAA LLCLKGSSAT FNFPESVTNI QTAQSFQPLL  120
MSPRSIQKVA AAAAAAYGSP IAATDLEGSN GVHGAAQSLQ DSLESNVKTE VDTEPMPNTA  180
TSNGDVGVTE EISWLEQFLE SPDRFNNYAA YDHQMLCCSL QSSDPSLVSN WVDENDHHED  240
LWKLWSFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1640104972Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.11e-20ERF family protein