PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041851-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 242aa    MW: 26554.7 Da    PI: 6.1133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041851-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-174695255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G+r ++ +g+Wv+eIr p     +  +r++lg++ tae Aa+a++aa ++l+g
  PSME_00041851-RA 46 QYRGIRKRS-WGSWVSEIRAP-----HqkTRIWLGSYPTAEAAARAYDAAVLCLKG 95
                      69****888.**********7.....335************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-3045105IPR001471AP2/ERF domain
PROSITE profilePS5103222.65546103IPR001471AP2/ERF domain
CDDcd000189.46E-1946105No hitNo description
PfamPF008475.2E-104695IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1946105IPR016177DNA-binding domain
SMARTSM003802.0E-3446109IPR001471AP2/ERF domain
PRINTSPR003671.8E-94758IPR001471AP2/ERF domain
PRINTSPR003671.8E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVCTSKNSEC HQNLLIGSQQ HLERRECPVS SKARKKSSSG SGQPRQYRGI RKRSWGSWVS  60
EIRAPHQKTR IWLGSYPTAE AAARAYDAAV LCLKGSSATL NFPESATNIH IPQICQPLLM  120
SPRSIQKVAA AAAYGYSTDL AGSNGVECAA QSLQDSLEST VKTEVGTEAM PNNVNSNGDV  180
GLTEEISWLE QFLESPSRVN DYAYDQQMLC CAWLSPEIPT PLSNWVDEGY GQDLCSNLWS  240
FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1545103160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-28ERF family protein