PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041970-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 243aa    MW: 27877.7 Da    PI: 9.0222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041970-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-121461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed+ l ++++ +G   W+  +++ g +R++k+c++rw +yl
  PSME_00041970-RA 14 RGAWTAKEDKFLSEYIRIHGDAGWTNLPKKAGINRCGKSCRLRWVNYL 61
                      89*******************9**********99************97 PP
2Myb_DNA-binding46.11.1e-1467110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E+ l+++ +++lG++ W++Ia +++ gRt++++k++w++
  PSME_00041970-RA  67 RGNISPDEEGLIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.14961IPR017930Myb domain
SuperFamilySSF466892.5E-2612108IPR009057Homeodomain-like
SMARTSM007176.2E-101363IPR001005SANT/Myb domain
PfamPF002497.5E-131461IPR001005SANT/Myb domain
CDDcd001671.55E-71661No hitNo description
PROSITE profilePS5129424.30862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2465116IPR009057Homeodomain-like
SMARTSM007177.7E-1466114IPR001005SANT/Myb domain
PfamPF002494.9E-1367110IPR001005SANT/Myb domain
CDDcd001678.09E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAISPCCSKE GLSRGAWTAK EDKFLSEYIR IHGDAGWTNL PKKAGINRCG KSCRLRWVNY  60
LHPDIKRGNI SPDEEGLIIR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLKKKLLMNK  120
RQDEMHNIKA RADSRLTLQN GVIKTTPVKI TAAVRHYEMV TPNRGSNIGN SDHPFKICNI  180
HETIYGLFMS CFDLFVNDSI PEDDSERLAF RREDANIAET EEDKQSLQHS DHLFDSNKLS  240
SPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204546.12e-65transcription factor MYB6
RefseqXP_021293767.12e-65transcription factor TT2-like
SwissprotQ9S9K91e-56MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9011e-87A0A167V901_PICAB; Transcription factor MYB30
STRINGEMJ057457e-65(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-59myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]