PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041995-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YC

Protein Properties

Length: 207aa MW: 24220.6 Da PI: 7.1441

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041995-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	147	4.1e-46	7	95	14	102
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 t+fk+h+lPlari ki+k+de vkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl+divprde+k PSME_00041995-RA 7 TEFKQHQLPLARIEKIMKSDEGVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVK 95 79************************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.68E-27	8	85	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.5E-35	8	76	IPR009072	Histone-fold
Pfam	PF00808	2.2E-20	13	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSILFLTEFK QHQLPLARIE KIMKSDEGVK MISAEAPVLF SKACELFILE LTLRSWLHTE 60 ENKRRTLQRN DIAGAISRGD VLDFLLDIVP RDEVKLHTEL LISQDSFWVL LMTENKYNTL 120 EIHILFGILR IWVLVIGRFR ELPKVLHMMT AQQAMSQQLI PHQPLMPDQQ LMYQPPQWLV 180 SDKAKALRYL MFSAAAVLFT CIYYLDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-45	7	91	11	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	69	RRTLQRN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085083	1e-113	EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366452.1	1e-51	nuclear transcription factor Y subunit C-1-like isoform X3
TrEMBL	A9NUT0	1e-65	A9NUT0_PICSI; Uncharacterized protein
STRING	PP1S159_32V6.2	7e-51	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-49	nuclear factor Y, subunit C1