PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042021-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 695aa    MW: 76306.7 Da    PI: 6.5741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042021-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29411469259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt++  Cpv+k+v+r aed +++++tYeg+Hnh 
  PSME_00042021-RA 411 SDGCQWRKYGQKMAKGNPCPRAYYRCTMSpCCPVRKQVQRLAEDRSILITTYEGSHNHM 469
                       7***************************9899**************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-31395470IPR003657WRKY domain
SuperFamilySSF1182904.84E-26403471IPR003657WRKY domain
PROSITE profilePS5081127.921405471IPR003657WRKY domain
SMARTSM007747.0E-34410470IPR003657WRKY domain
PfamPF031068.7E-26412468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MERLLLGFLG RSVRRYISCM GEELLLDRFG EPNWRLSGSE NAGLLAFRSM MSNGAGRFER  60
KALGIDLSVK LEEVDDGGRS LQDNNGSHEE EKNSYENRAK DFFPHESGRL SFKLLPVDGE  120
SKAEDGTRDM MSQDAGDEDD KPGINVSTGL QLVTVPARNA ASDRSTVEME DCASPINSQE  180
TSNPDEMDVE PNSELVMVQK ELNRMNEENQ RLRFMLNQIN SSYNNLQLQL ASLMKQQPQN  240
FGHAVREQVH KEEKLNIFRG LTGNNNGEAA DDQNPIQRQF LEIKDLSRLN ASTNSHEDSH  300
TSEPRRIHGE NDQEESKALM TFNHNDNKHS RDHDNHGSTL KGHESPDRTP SPHPSPSHHE  360
NGGTPQREGS MDRTSPGWVP NKIQKIVDQT DATIRKARVS VRARTESPMI SDGCQWRKYG  420
QKMAKGNPCP RAYYRCTMSP CCPVRKQVQR LAEDRSILIT TYEGSHNHML PPAATAMAST  480
TAAAAQMLLS GSSTSADNIA LNASFMAGAL MQHPCNTSTA SISASAPFPT ITLDLTHNPN  540
QMPTAPGHMA ASNPRPLAGL QSHAMPFVGM PHQFPTNTPQ GGLYHGQSIY NTHSMFAPLA  600
GQPQRPPQPM MPTTPKVNIQ PGQQQQQQQQ PSFMDTVSAA TAAITSDPNF TAALAAAITS  660
LINNNNANSI SKPNSSQAVN TSPQVAAHVK TDHSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22397473176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031270.0BT103127.1 Picea glauca clone GQ0207_A12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QNA70.0A0A0C9QNA7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18796_2280 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-75WRKY family protein