PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042064-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 249aa    MW: 28235 Da    PI: 7.924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042064-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ll+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00042064-RA 14 KGAWTKEEDDLLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding58.81.2e-1867111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  PSME_00042064-RA  67 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.53961IPR017930Myb domain
SuperFamilySSF466892.62E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001677.70E-111661No hitNo description
PROSITE profilePS5129428.98562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2865116IPR009057Homeodomain-like
SMARTSM007179.4E-1866114IPR001005SANT/Myb domain
PfamPF002496.7E-1767111IPR001005SANT/Myb domain
CDDcd001673.47E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRSPCCEKI NTNKGAWTKE EDDLLIAHIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSQG  120
FDPQTHRPLA EPYKAGVTRP AFDHEIQAFE NPRTPEMADF FQCERFRSSP IELAASKDEM  180
HPDLNLDLCI SLPSHSAPAV NRASSGDRTA DLKLNSIGCD TGLQVIYAGC YDRRYCEQNA  240
GDFSHNRLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.12e-93myb-related protein 308
SwissprotP813938e-89MYB08_ANTMA; Myb-related protein 308
TrEMBLA9NYS61e-142A9NYS6_PICSI; Uncharacterized protein
STRINGERM938827e-93(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-90myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]