PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042113-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 196aa    MW: 22359.9 Da    PI: 4.4009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042113-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY551.6e-17111164259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+W+KYGq+ +k   +pr    C ++g  vkk+ver++edp++v++tY+g H h+
  PSME_00042113-RA 111 EDGYKWKKYGQRCIKHRIHPR----CRTSGFLVKKQVERCSEDPEYVVTTYNGIHSHT 164
                       8***************99996....********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-1999164IPR003657WRKY domain
SuperFamilySSF1182902.22E-17103164IPR003657WRKY domain
PROSITE profilePS5081120.013105166IPR003657WRKY domain
SMARTSM007742.4E-14110165IPR003657WRKY domain
PfamPF031061.1E-11111163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRLVLFSSY MGQLMAFQGL VPCLYVFFYC DMKMYGVHKN DEDGVADDTD YIATDVPARD  60
INDNDTIGSN ANDDGYDVGI DDEDEDEDDV PVEAEETILC LRTKSDKDVL EDGYKWKKYG  120
QRCIKHRIHP RCRTSGFLVK KQVERCSEDP EYVVTTYNGI HSHTVALMNS SPSTQRNTFD  180
LRFQVFGLPG VRPRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-15101163874Probable WRKY transcription factor 4
2lex_A3e-15101163874Probable WRKY transcription factor 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-20WRKY family protein