PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00042235-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 226aa MW: 26349.8 Da PI: 6.9046

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042235-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	38	80	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 E+ RR+r+++ ++L++llP + +K + e A++YI +L PSME_00042235-RA 38 SEQLRRKRMKHLSAQLKSLLPAtP-----PKIDRCRLYEAAINYITKL 80 69********************55.....8999999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.817	30	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-9	35	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0015	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-8	36	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-4	37	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MENSQDSFQD SDDLQEIVWR DVDKMMKATT QAGSQVVSEQ LRRKRMKHLS AQLKSLLPAT 60 PPKIDRCRLY EAAINYITKL EEDLHQLQRK REHLLAIQSG KRANENIDHK VTFEIYGREA 120 IISITSQRRP RCLWRIFEEL QTHGLDVETS QFFTGQSFVF LYFHVKFRDN ISQDPVQIRT 180 SVENCFAGVL AHNSHVTGAD HCHFTASLYY GVVISEDHEE WFFCKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677793	1e-175	EF677793.1 Picea sitchensis clone WS02775_B17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LPL5	4e-96	B8LPL5_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.4	2e-07	bHLH family protein