PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042236-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 222aa    MW: 25825.5 Da    PI: 6.5144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042236-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-0565113355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +   +E+ RR+r++    +L +llP       +Kl+     e+A++YI +L+
  PSME_00042236-RA  65 GSQVVAEQLRRKRMKCLCTQLESLLPMT----TPKLDRCGLYEEAINYITKLE 113
                       566789*********************8....69***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.01462112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1063125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.44E-564117No hitNo description
Gene3DG3DSA:4.10.280.104.2E-968127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-468118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAFHGFPSNS NAQQCTPPSQ ADCQVIASRK RPFEVDLDSQ QELKDLQEIV WRDVDQMTIK  60
DTTRGSQVVA EQLRRKRMKC LCTQLESLLP MTTPKLDRCG LYEEAINYIT KLEEDLRQLK  120
RKRDRLLAIQ SGKTVNKNID LKVAVEIYDR EAIIGITGQR RPRYLWKILE ELETHGLDVE  180
TSQLFTGESF VFLYFHVNFT DNVSHDPDQI RSSLECRLIL TY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-99A9NYK8_PICSI; Uncharacterized protein