PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042272-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 236aa    MW: 26255 Da    PI: 8.6945
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042272-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.95.4e-27299193
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+ G +g++l++++ ++q+
  PSME_00042272-RA  2 SCNGCRVLRKGCSESCILRPCLnwintAESQANATLYLAKFYGRAGLTNLISNGPEHLRPAIFRSLLYEACGRILNPIDGLLGLLLSGNWAVCQA 96
                      6*********************9999778899*************************************************************99 PP

            DUF260 91 kae 93
                       +e
  PSME_00042272-RA 97 GVE 99
                      877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1991107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-21299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLNWINTAE SQANATLYLA KFYGRAGLTN LISNGPEHLR  60
PAIFRSLLYE ACGRILNPID GLLGLLLSGN WAVCQAGVES ILLGTFAAYT WADFSCDIVG  120
TARQELQRSV KPIGRFKRLP DSKARRKERK LEPAISKSTK SDDLANITNA LHKAKFNDKY  180
IEKYSTLVSR QELHQFVSAH QTQTEYSNDQ CNLKTSHETE VPCNEVGLEL RLGSQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026386660.13e-58LOB domain-containing protein 41-like
TrEMBLA0A200Q3F68e-58A0A200Q3F6_9MAGN; Uncharacterized protein
STRINGAquca_026_00293.13e-55(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-54LOB domain-containing protein 42