PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042322-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 378aa    MW: 43501.6 Da    PI: 8.9894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042322-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-066889223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+dCg sF+ + +L++H  +H
  PSME_00042322-RA 68 VCQDCGASFNKPAHLEQHKISH 89
                      8*****************9988 PP
2zf-C2H216.62.2e-0595119123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   C  s++r+++L+rH+ +H
  PSME_00042322-RA  95 FVCPvdGCFCSYKRQDHLNRHLVKH 119
                       89********************998 PP
3zf-C2H217.98.5e-06124148123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp  dC+   s+ snLkrH+++H
  PSME_00042322-RA 124 FVCPkeDCKLQLSSMSNLKRHLKRH 148
                       89**********************9 PP
4zf-C2H219.62.6e-06168190121
                       EEET..TTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                       y+Cp   Cgk+F+++s L++H+ 
  PSME_00042322-RA 168 YPCPkpCCGKTFTSPSRLVKHLD 190
                       89*******************86 PP
5zf-C2H216.52.4e-05259283223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +C+  +C  sF+ ksnL++Hir  H
  PSME_00042322-RA 259 QCHfdNCLHSFTKKSNLNQHIRAvH 283
                       7*********************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355171942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-56685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.7366794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806789IPR007087Zinc finger, C2H2
SMARTSM003550.246789IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.64E-979121No hitNo description
Gene3DG3DSA:3.30.160.602.6E-1186121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.05895119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4122148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.13E-5122189No hitNo description
PROSITE profilePS501578.85124153IPR007087Zinc finger, C2H2
SMARTSM003550.0062124148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-5162189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.24168194IPR007087Zinc finger, C2H2
SMARTSM003550.0089168193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
SMARTSM003550.43200225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202225IPR007087Zinc finger, C2H2
SMARTSM0035522228249IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695258288IPR007087Zinc finger, C2H2
SMARTSM003550.057258283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260283IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-5263287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.86E-8268312No hitNo description
Gene3DG3DSA:3.30.160.607.2E-5288312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9289315IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAAEEDEKAS KSPKDVRRYC CKTCGITRSK RILLKLHIIS SHGREALEND ERFASETEGQ  60
SHRRSLCVCQ DCGASFNKPA HLEQHKISHT GERTFVCPVD GCFCSYKRQD HLNRHLVKHE  120
GKLFVCPKED CKLQLSSMSN LKRHLKRHEE RGESWQSQNL KSREVKKYPC PKPCCGKTFT  180
SPSRLVKHLD DVHSTTSVEA VCCEPGCYKY FTNEKALREH VQQNHSRVCC EVCGSSQLKK  240
QIKRHMRIHE SQTCVERIQC HFDNCLHSFT KKSNLNQHIR AVHLGLRPFK CRFAECEMSF  300
AHKAVRDNHE KTGRHCYVQG DFFEEDAAFQ SRPRGGRKRK MFTVNTLLKK RVACPDRSSS  360
VLDNGSSFLD WLTSSGGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-156219410160PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-156219410160PROTEIN (TRANSCRIPTION FACTOR IIIA)
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331339RPRGGRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1096510.0BT109651.1 Picea glauca clone GQ03211_B12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-120PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-120PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-120PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-120PREDICTED: transcription factor IIIA
TrEMBLA0A2G5F7C61e-120A0A2G5F7C6_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.11e-121(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.18e-75transcription factor IIIA