PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042339-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 312aa    MW: 35012.4 Da    PI: 9.0567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042339-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-093680446
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ +  +l+ +a + + ++   +W+++a++++ g+t+ +++ ++ +
  PSME_00042339-RA 36 WSLQQNKLFENALAIYDKDtpdRWEKVAKMLP-GKTAIDVRKHYED 80
                      ********************************.***********76 PP
2Myb_DNA-binding42.41.6e-13143187347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ +++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  PSME_00042339-RA 143 PWTEDEHRQFLLGLHKFGKGDWRSISRNFVVSRTPTQVASHAQKY 187
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.5973186IPR017884SANT domain
SMARTSM007171.5E-83284IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-123490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-43682IPR009057Homeodomain-like
PfamPF002491.5E-63681IPR001005SANT/Myb domain
CDDcd001673.81E-64282No hitNo description
PROSITE profilePS5129418.439136192IPR017930Myb domain
SuperFamilySSF466891.45E-16137192IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-18139190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-11140186IPR009057Homeodomain-like
SMARTSM007171.7E-11140190IPR001005SANT/Myb domain
CDDcd001676.96E-10143188No hitNo description
PfamPF002492.2E-11143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MPYFLSSFSQ DFKICAMWEM EFPSQETSLS SSGSFWSLQQ NKLFENALAI YDKDTPDRWE  60
KVAKMLPGKT AIDVRKHYED LVEDVTCIED GRVALPTYSN SSCTLEWIAE KSGDMHGLKQ  120
QFGSGGKGPS TKPSEQERKK GVPWTEDEHR QFLLGLHKFG KGDWRSISRN FVVSRTPTQV  180
ASHAQKYFIR LSSDNKNKRR SSIHDITTVN GTDRRPFPLP QTSTRQTNSP LRQADINHSP  240
CLTYPSPISR GPLINSLGSQ ADGSPLMSPH YPLSLYTQRG FGGHSPRIII PDSSIGIGMP  300
HLGYPGQPAM QY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2028101376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1070220.0BT107022.1 Picea glauca clone GQ03101_N16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429310.14e-81transcription factor DIVARICATA
RefseqXP_006480971.14e-81transcription factor DIVARICATA
SwissprotQ8S9H72e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D6R2Q14e-90A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGXP_006480971.11e-80(Citrus sinensis)
STRINGXP_006429310.12e-80(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-69MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]