PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042449-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 363aa    MW: 40205.1 Da    PI: 10.2087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042449-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31293350359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  PSME_00042449-RA 293 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 350
                       99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.9E-19244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.3E-34279350IPR003657WRKY domain
PROSITE profilePS5081130.481286352IPR003657WRKY domain
SuperFamilySSF1182902.48E-27289350IPR003657WRKY domain
SMARTSM007742.5E-38291351IPR003657WRKY domain
PfamPF031063.6E-27293349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
PVATLLEKSL NLLPPALHCK TGLRTESWPA TRRANEAINE DGCRWKRCSG RFCRLASLCS  60
LYPAAPLLII TTDHHCCQQE LRSRVRVVKG GATAEGDGFV NGALSFVLQS FCFRLSGKIE  120
AEAAAMREVN NVEETNRAGL DCSYRVLAIL SQQHQQHQDQ RHAMSDLDMS AKEAIAKFQK  180
VVSLLGSRKG HARVRRGPRQ SPAHTKAFME APSYNGSVAN DKPLLTYHQL MNPVQEGGTV  240
SSSKRKCSGK GDEAGGKCRS TGRCHCSKRR KLRVKRSIRV PAISSKLADI PPDDYSWRKY  300
GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCLEDPSMLI VTYEGEHNHS RKLSGSPNLV  360
VHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20279349271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1165900.0BT116590.1 Picea glauca clone GQ03802_L02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764184.12e-68PREDICTED: probable WRKY transcription factor 7
RefseqXP_016479490.12e-68PREDICTED: probable WRKY transcription factor 7
TrEMBLA0A2P5REZ61e-80A0A2P5REZ6_GOSBA; Uncharacterized protein
STRINGGSMUA_Achr8P20660_0013e-75(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-64WRKY DNA-binding protein 21