PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00042468-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Protein Properties

Length: 74aa MW: 8562.78 Da PI: 5.4781

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042468-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.3	1.7e-10	4	72	11	80
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfv 80 l+++ l++ f++++ +g++ t+ed +g sW+++ y ++++r+v+t+GW eF+ +++ k+gD++ PSME_00042468-RA 4 LTLHPLSFHVVFMTKYlSGSQ---GIATFEDCDGISWRIEWyAYLQSGRRIVFTTGWYEFAFDHNAKDGDIL 72 566667777788989964442...269***********9456999999******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.46	1	74	IPR003340	B3 DNA binding domain
CDD	cd10017	3.28E-9	3	72	No hit	No description
Pfam	PF02362	7.5E-9	5	72	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-9	9	73	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-10	11	73	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MPVLTLHPLS FHVVFMTKYL SGSQGIATFE DCDGISWRIE WYAYLQSGRR IVFTTGWYEF 60 AFDHNAKDGD ILLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A176VD87	4e-17	A0A176VD87_MARPO; Uncharacterized protein
TrEMBL	A0A2R6WGI7	4e-17	A0A2R6WGI7_MARPO; Uncharacterized protein