PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042556-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 159aa    MW: 17593.9 Da    PI: 10.6719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042556-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-086395436
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapsk 36
                       h + ErrRR++++++fe L + lP +s+a+s+
  PSME_00042556-RA 63 HHLISERRRREKLKESFEALSSFLPRCSRAQSQ 95
                      68899*********************9844443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-75993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-56193No hitNo description
Gene3DG3DSA:4.10.280.107.8E-86395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-56395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLSAFGMWRP PSKLSTAPMV EGQYRLKRGL AILRNIHVQR LRQISLSGSY RPPGGTTSTG  60
QVHHLISERR RREKLKESFE ALSSFLPRCS RAQSQEGAQL ESELKNLPRT QSQEVEGTST  120
ARKQQGSTIT EAGDSMEVDE VKEGLVNAAR KYGGPLPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
26873RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-