PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00042612-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 182aa MW: 20981.6 Da PI: 10.7003

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042612-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.9	1.1e-05	63	106	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e+ ++F +n ps + L+k+l+L+ + V +W +N R PSME_00042612-RA 63 ANAVERFRQVFFENELPSMPYKLVLSKQLDLPYQHVHMWLKNAR 106 5678889999********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-8	44	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.349	52	112	IPR001356	Homeobox domain
SMART	SM00389	0.0034	54	116	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-7	54	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MPRNEKSNET NIMGKGVVGP KKKIPKEKEV ESASLTSVVR VENKSRNTKR KNESRRTLSR 60 LPANAVERFR QVFFENELPS MPYKLVLSKQ LDLPYQHVHM WLKNARHMSL KKKKLNCLKE 120 SVAPVIFANT IRLKVEIYPK EGVDFSNDKN PEGISNLLSE ELLMYVPVVE LRKKTLQVAP 180 VK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	4e-14	pathogenesis related homeodomain protein A