PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042673-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 173aa    MW: 19266.7 Da    PI: 4.9917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042673-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.61.5e-41111101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++++kC+++Cvlapyfp+++p+kf  vh+lFG+ +v+kll++lp+e+r da+sslvyeAear+ dPv+G++gvi++l+++leq++ +
  PSME_00042673-RA  11 ACAACKFQKKKCSEKCVLAPYFPQNDPNKFLLVHRLFGNGHVVKLLQDLPTEQRGDAVSSLVYEAEARVADPVHGCTGVINNLHKKLEQVQLQ 103
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la+++++
  PSME_00042673-RA 104 LASAEAK 110
                       *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.32210111IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
NMSQVSTAEA ACAACKFQKK KCSEKCVLAP YFPQNDPNKF LLVHRLFGNG HVVKLLQDLP  60
TEQRGDAVSS LVYEAEARVA DPVHGCTGVI NNLHKKLEQV QLQLASAEAK LANISAQESN  120
FLTNLINTED HQGWDPNFCS ISLQESQETQ YTNATVKLDD EVDSLLLWDY RLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3581188118LOB family transfactor Ramosa2.1
5ly0_B2e-3581188118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240601.13e-45LOB domain-containing protein 1-like
SwissprotQ9LQR03e-44LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI93e-56B8LQI9_PICSI; Uncharacterized protein
STRINGSolyc06g005090.2.11e-44(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-40LOB domain-containing protein 1