PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042685-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 404aa    MW: 44096 Da    PI: 4.6703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042685-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00063543911254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+ YIksL
  PSME_00042685-RA 354 RKEKLGDRITALQQLVSPF-----GKTDTASVLWEAIVYIKSL 391
                       677888999*******998.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.217342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-9352399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-5352396No hitNo description
Gene3DG3DSA:4.10.280.102.3E-6352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAGVSSGNYL WSADSRVCPS ANSVWSSILL QTTEMQAALP CSSNALSEMG NLDWPSTDVC  60
DMTPNSACDV NVVAGSIPNV SSDLNMAFTN LGRPELGDSA SLLDSTAQMG AFAALPESHV  120
WSQAMLSRGG ESMQNSVESL HEALYSRQNG SPQKLKDLED VSASWELRNF TAFQGEQTNF  180
KENSYGPLQN CNGSLIDLGN SPSLEADGLT RGVPINSFNS RLDLPKPHFD IGSVKQEFNM  240
SYDNPRVDAP RTVVSQGFRS DPCNNEDLLH ILLKQPSNST DRASPLQYHL AQFLQEGKQL  300
NNTAQSLNMP RSDEARDAVN DAKRSSPDSS SSDSIFKRPR LENSNSTLPT FKVRKEKLGD  360
RITALQQLVS PFGKTDTASV LWEAIVYIKS LHEQVQVISI VIVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0171328e-35JQ017132.1 Pinus taeda isolate 711 anonymous locus 0_14559_01 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-22bHLH family protein