PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042783-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 251aa    MW: 28691.6 Da    PI: 8.4787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042783-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-08184229554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 
                       h  +Er+RR+++ + f+ Lr l+P  +      K    a++L+++ +Y+ +L
  PSME_00042783-RA 184 HVVAERKRREQMSDVFSALRALVPVkP------KnAGRATVLRQTKDYVIDL 229
                       8899*********************44......4488999999999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.557179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14180247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-9183234No hitNo description
Gene3DG3DSA:4.10.280.101.9E-13183245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSPTTSPIL LLDDIYNTSL EPLDPNNKID NHNFCELLDL MDPLTDWQAD SFESVAVDHH  60
FSCLPPSCSN DHASSDLLLQ SQMGIDNWKP SIISVSTEGI HSNWNGLGLS FHKKRNSAFV  120
EWKAINPYLP RSCKPRKYFS LQKRCIRFLN DINNHKIPQP LSYNGHISGN MAVSNHYDKL  180
AIHHVVAERK RREQMSDVFS ALRALVPVKP KNAGRATVLR QTKDYVIDLK KSIQQLEQRN  240
RELEALLYQK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-09bHLH family protein