PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042784-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 211aa    MW: 23845.6 Da    PI: 9.9923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042784-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-06146169830
                       HHHHHHHHHHHHHHHHHCTSCC.C CS
               HLH   8 rErrRRdriNsafeeLrellPk.a 30 
                       +Er+RR+++ + f+ Lr l+P  +
  PSME_00042784-RA 146 AERKRREQMSDVFSALRALVPVkP 169
                       7********************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.851138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-10143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-5144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-11145204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-5145193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MANSFKFAAD YHYDCLLPPS PNDLLSSDFF LQSQMGIDNA QPSLHLENSI MSISTEGIHG  60
NWKGLGLSFI KKRSSALMEW KAINTDLPCS CKPKKYSLLQ KRCIRFLNDI NNNRIPPPLS  120
YGSNSGNPSK AVSNNYDMLA IHYVVAERKR REQMSDVFSA LRALVPVKPK NAGRATVLLQ  180
TKECVIDLKK KIQRSEQRKR ELEALLLCQK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151ERKRRE
2188199KKKIQRSEQRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-07bHLH family protein