PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042827-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 265aa    MW: 30753.2 Da    PI: 8.4715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042827-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11190233755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++Er+ R+++N+ +  Lrel P+      +K++K++i+  A++YI++Lq
  PSME_00042827-RA 190 AAERKQRRKVNELLMSLRELAPNI-----TKMDKSSIVSDAIDYIQNLQ 233
                       79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.101.6E-71260IPR014710RmlC-like jelly roll fold
SuperFamilySSF511822.1E-81766IPR011051RmlC-like cupin domain
PROSITE profilePS5088813.916183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-14187251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-11189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.67E-10190237No hitNo description
PfamPF000101.5E-8190233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-11190248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQHALAIIAL RRVHYSSLAN AFSDEILEAA FNTNAEQLEH IFVGQKRGVI VHARGEQIRE  60
MMRRHEFSAE SYCVWENLWG VVHWKQLAIL KWVLQAFQVT VLIHSIPFLE WNRLDHTYMP  120
NKNIQNAEPA SAPCNIVVKD IGKRSKRNCS SMLITFGQNE EHYTDTVTNI VDKRGQESPS  180
NVSWASRNLA AERKQRRKVN ELLMSLRELA PNITKMDKSS IVSDAIDYIQ NLQKQIKERE  240
VEQWESMQEM QIKKDILDTA SKYGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4lej_A1e-141776148207Vicilin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-15bHLH family protein