PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00042868-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 388aa MW: 44509.3 Da PI: 4.6176

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042868-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	298.9	4.4e-92	211	388	1	188
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+r aqgs+w+q ycs+fh ++alneg+pg+ p+lrp+gidlkdgllf+al +k+ k gipece at+kspwna+ PSME_00042868-RA 211 PPPEAFLGPKCALWDCPRLAQGSNWCQYYCSNFHGMVALNEGPPGMGPILRPGGIDLKDGLLFSALGTKTVVKYFGIPECEDVATKKSPWNAP 303 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfdl +l+ e irewlffdkprr fe +y+g gwhesrkqvmke gg+krsyymdp ps++fewhlyeye+n++d++aly+le PSME_00042868-RA 304 ELFDLFVLQREVIREWLFFDKPRRDFE----------NYNGCGWHESRKQVMKEIGGMKRSYYMDPYPSNQFEWHLYEYEMNNCDSCALYQLE 386 *********************98..........6***************************************************** PP VOZ 187 lk 188 lk PSME_00042868-RA 387 LK 388 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MMGKRSKSMP KLTNHQLFKT KAKNRVDDLH GMFTDMQQIQ VNDALVLEEQ VHQLPWECKV 60 ELHEESPTTS MLEASLCSSY LSCDMWHLLQ LHEEEDDATS ILAAPYSSKF QLNENNLEAA 120 NPSSFQEAIP PNEMRKDFYV DHVIAEAQNI DATSRSENIH TKSLLQTTDE GLEAVAQMNQ 180 DFDHNLYLSL DPEVEEEHIP KFQGPCPGIS PPPEAFLGPK CALWDCPRLA QGSNWCQYYC 240 SNFHGMVALN EGPPGMGPIL RPGGIDLKDG LLFSALGTKT VVKYFGIPEC EDVATKKSPW 300 NAPELFDLFV LQREVIREWL FFDKPRRDFE NYNGCGWHES RKQVMKEIGG MKRSYYMDPY 360 PSNQFEWHLY EYEMNNCDSC ALYQLELK

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MMGKRSKSMP KLTNHQLFKT KAKNRVDDLH GMFTDMQQIQ VNDALVLEEQ VHQLPWECKV  60
ELHEESPTTS MLEASLCSSY LSCDMWHLLQ LHEEEDDATS ILAAPYSSKF QLNENNLEAA  120
NPSSFQEAIP PNEMRKDFYV DHVIAEAQNI DATSRSENIH TKSLLQTTDE GLEAVAQMNQ  180
DFDHNLYLSL DPEVEEEHIP KFQGPCPGIS PPPEAFLGPK CALWDCPRLA QGSNWCQYYC  240
SNFHGMVALN EGPPGMGPIL RPGGIDLKDG LLFSALGTKT VVKYFGIPEC EDVATKKSPW  300
NAPELFDLFV LQREVIREWL FFDKPRRDFE NYNGCGWHES RKQVMKEIGG MKRSYYMDPY  360
PSNQFEWHLY EYEMNNCDSC ALYQLELK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018860316.1	1e-137	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018860317.1	1e-137	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018860319.1	1e-137	PREDICTED: transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	1e-127	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2I4HVY4	1e-136	A0A2I4HVY4_JUGRE; transcription factor VOZ1-like isoform X1
STRING	EMJ15159	1e-136	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-130	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]