PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00042877-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

ERF

Protein Properties

Length: 489aa MW: 54865.9 Da PI: 7.5528

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00042877-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45	2.7e-14	33	81	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr ++ rgr++AeI+dp++ +k+ +lg+++taeeAa a++ a++++ PSME_00042877-RA 33 RYRGVRKRP-RGRFAAEIHDPKT---KKQRRLGTYDTAEEAACAYDFAARAMS 81 69*****.8*****954...5*****************9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.6E-23	33	89	IPR001471	AP2/ERF domain
CDD	cd00018	3.48E-23	33	89	No hit	No description
SMART	SM00380	1.8E-26	33	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.36E-17	33	90	IPR016177	DNA-binding domain
Pfam	PF00847	3.5E-8	33	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.452	33	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MKSQQQQSLQ KNESLSPNKL SEKQFKRGKE AGRYRGVRKR PRGRFAAEIH DPKTKKQRRL 60 GTYDTAEEAA CAYDFAARAM SGIKARTNFI YLNSDHCMLS TPTPTASLTG STFPTNIKDP 120 FSHKPQKLQE LWLHCLWRDS STTRPSPCDE AKQQQQKQQF SVNGGYTMLG NTVSSWRPSN 180 NEIENNNNQL LARAGSSSLV PVSLPRDHHS INASTWQNLP LADPLLLSLS KNTIDHTYRS 240 TIPSPVSSST TCSSVTKISD HKRAFNNNIT ITPENAIPLS NPVESVYFLP CLEEPAYEVS 300 RPVSPYSYTL SSNVEHQFQN HADSNGYSDS GLLDQIISGY LQMSVSATSP ASSVCIPKYF 360 SNNNTLNCAV YVPLENYSTI TPTCTGFNTS DHIMADLERF IEKNYIGLYF NPQAQQQPQD 420 QQQPPPPQDQ PQQRQQLEAK NFNSTHFSAP YPYTGYLFSM PRISDALEEI LHLTAELFDS 480 QQYGNGYDS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MKSQQQQSLQ KNESLSPNKL SEKQFKRGKE AGRYRGVRKR PRGRFAAEIH DPKTKKQRRL  60
GTYDTAEEAA CAYDFAARAM SGIKARTNFI YLNSDHCMLS TPTPTASLTG STFPTNIKDP  120
FSHKPQKLQE LWLHCLWRDS STTRPSPCDE AKQQQQKQQF SVNGGYTMLG NTVSSWRPSN  180
NEIENNNNQL LARAGSSSLV PVSLPRDHHS INASTWQNLP LADPLLLSLS KNTIDHTYRS  240
TIPSPVSSST TCSSVTKISD HKRAFNNNIT ITPENAIPLS NPVESVYFLP CLEEPAYEVS  300
RPVSPYSYTL SSNVEHQFQN HADSNGYSDS GLLDQIISGY LQMSVSATSP ASSVCIPKYF  360
SNNNTLNCAV YVPLENYSTI TPTCTGFNTS DHIMADLERF IEKNYIGLYF NPQAQQQPQD  420
QQQPPPPQDQ PQQRQQLEAK NFNSTHFSAP YPYTGYLFSM PRISDALEEI LHLTAELFDS  480
QQYGNGYDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-14	28	89	9	71	Ethylene-responsive transcription factor ERF096

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	5e-08	ERF family protein