PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042878-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 162aa    MW: 18649.2 Da    PI: 9.9161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042878-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.74e-154090155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GVr+++ +gr+vAeIrdp+    +  r +lg+++t +e a a++ a++++ g
  PSME_00042878-RA 40 SRYRGVRRCP-WGRFVAEIRDPK----TiERRWLGTYDTVKESACAYDFAARAMSG 90
                      79********.**********94....46999****************99998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-174098IPR016177DNA-binding domain
CDDcd000182.35E-224097No hitNo description
PfamPF008471.3E-84090IPR001471AP2/ERF domain
SMARTSM003806.6E-2141104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-224197IPR001471AP2/ERF domain
PROSITE profilePS5103218.614198IPR001471AP2/ERF domain
PRINTSPR003671.2E-64253IPR001471AP2/ERF domain
PRINTSPR003671.2E-66480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQSLKVNMLS LEQQSELQKN EILSPNKLSE KQFKRGKEAS RYRGVRRCPW GRFVAEIRDP  60
KTIERRWLGT YDTVKESACA YDFAARAMSG IKGWTNFIYL NSKHCMLSTP TPPASLTGST  120
FPTNIKDPFS HKPQKLQDTW LDCLWRDSST TRPSPCDEAK QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-153697971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552721.14e-27PREDICTED: ethylene-responsive transcription factor ESR1-like
RefseqXP_016557500.14e-27PREDICTED: ethylene-responsive transcription factor ESR1-like
RefseqXP_020205829.13e-27ethylene-responsive transcription factor ESR2
TrEMBLA0A151R0T14e-26A0A151R0T1_CAJCA; Ethylene-responsive transcription factor ESR2
TrEMBLA0A1U8F2559e-26A0A1U8F255_CAPAN; Ethylene-responsive transcription factor LEP
TrEMBLA0A1U8FFL69e-26A0A1U8FFL6_CAPAN; ethylene-responsive transcription factor ESR1-like
TrEMBLA0A2G2VN099e-26A0A2G2VN09_CAPBA; Ethylene-responsive transcription factor LEP
TrEMBLA0A2G3B9089e-26A0A2G3B908_CAPCH; Ethylene-responsive transcription factor LEP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-27DORNROSCHEN-like