PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042879-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 468aa    MW: 52307.5 Da    PI: 8.5304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042879-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42e-143482254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GV++++ rgr++AeIrdp++   + r +lg+++taeeAa a++ a++++ 
  PSME_00042879-RA 34 RYRGVSRRP-RGRFAAEIRDPKT---KERRWLGTYDTAEEAAWAYDFAARAMS 82
                      69*******.8*********954...4999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-253490IPR001471AP2/ERF domain
PfamPF008471.8E-83483IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-183491IPR016177DNA-binding domain
SMARTSM003805.3E-283497IPR001471AP2/ERF domain
PROSITE profilePS5103220.2313491IPR001471AP2/ERF domain
CDDcd000188.48E-263490No hitNo description
PRINTSPR003675.2E-63546IPR001471AP2/ERF domain
PRINTSPR003675.2E-65773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESLRPNK LSKKQFKRGK EAGRYRGVSR RPRGRFAAEI RDPKTKERRW  60
LGTYDTAEEA AWAYDFAARA MSGIKARTNF IYLNSEHCML STPTPPASLT GSTFPTNIKD  120
PFSHQHQKLQ DTWLDCLWRD SSTTRPSPCD EVKQQHQKQQ FSINGGYNML GNTVSSWRPS  180
NNKIENNNNQ LLAGAGSSSV VPVSLPRDHH SINASTWQNL PLADPLLLSL SKNTIDHTHR  240
STIPSPVSSS ATCSPVTKIS AHKRAFNNNI TITPENAIPL SNPVESVYFL PCLQEPACEV  300
CSPVSPYSYT LSSNVEHQFQ NLADSNGHSD SGLLDKIISG YLPMSVSATS PASSVFIPKY  360
FSNNNTLNCV VYVPQENYST ITPTCTASNT SDHIMADLES FIETNYIGLY FNPEAQQQPQ  420
DHQQPPPPPQ DQPKLAATRG KQFQQHPLLS SLSIHWLFIQ HATYFRCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-172990971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-11DORNROSCHEN-like