PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042940-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 447aa    MW: 49693.9 Da    PI: 4.6329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042940-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20112160355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++aa++k++g
  PSME_00042940-RA 112 YRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAAARKIRG 160
                       9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32111169IPR001471AP2/ERF domain
PROSITE profilePS5103223.999111168IPR001471AP2/ERF domain
SMARTSM003801.2E-36111174IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22111169IPR016177DNA-binding domain
CDDcd000183.55E-19112167No hitNo description
PRINTSPR003671.2E-11112123IPR001471AP2/ERF domain
PfamPF008476.4E-14112160IPR001471AP2/ERF domain
PRINTSPR003671.2E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MCGGAIISDF IIPPANRGRR VTARDIWPDF DKFSEFINGG AAVETFDVSV NVDEEDDDSD  60
DDDLLDFDES CQKKKKNQKQ QPIPTKSVEF TSARNLEGPA AKSAGRKRKN LYRGIRQRPW  120
GKWAAEIRDP RKGARVWLGT FNTAEEAARA YDAAARKIRG KKAKVNFVDE PPPIKKETNN  180
GKGSRKESSK KVKSCTTPRA DFFQGFKMAN PSNTHLNFNQ KSPNPSYNDL GFLNPESPLQ  240
NFYGPNFATK PISSALPAYS STEFSDFDDS EVDNLVPHSA SFQPMTNITK RKGYNYFESD  300
TSSVSVDRSP FSWVQEVKTS EISSVLKAET ESNQCNFADM STPVTTDVSV GSPEVLLPPF  360
NNGFDKSPNV EDGVASEKSP KLEESSQLEM SEELPTLESY PWLFQMPYFE GSLDQSLQGV  420
GIGEASFPDG ENDLQLWSFD PISDSAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21112167359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWS10.0A9NWS1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-29related to AP2 12