PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042944-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 253aa    MW: 28308.7 Da    PI: 8.113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042944-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30151208259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K  ++s++prsYYrC+ ++C+vkk+ver+a+dp ++++tYeg+Hnhe
  PSME_00042944-RA 151 EDGYKWRKYGRKLLRSSPHPRSYYRCSENNCSVKKRVEREASDPGLLITTYEGTHNHE 208
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-32137210IPR003657WRKY domain
SuperFamilySSF1182906.8E-27143210IPR003657WRKY domain
PROSITE profilePS5081129.918145210IPR003657WRKY domain
SMARTSM007749.9E-33150209IPR003657WRKY domain
PfamPF031061.4E-24151208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQTFENRENL GPNSLANPQH SAESSLDPIN PLLWYNPMAA NANYSATFNQ ESHSFYQHGA  60
PLDFVVDKNR DYGFPGREMK IVESTACTSP AAQCFPSPEE QPSADVSGNN KCLDLAGEIA  120
DSESSKRRKI RKTEKGPRYV FKTRSERDVL EDGYKWRKYG RKLLRSSPHP RSYYRCSENN  180
CSVKKRVERE ASDPGLLITT YEGTHNHESP SVIYYIGKPI ILPQTPGSKP AIVLVNAGVC  240
PEAVFTFASQ QAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25141211878Probable WRKY transcription factor 4
2lex_A3e-25141211878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB885e-64A0A0D6RB88_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-35WRKY DNA-binding protein 50