PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00042946-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 439aa    MW: 49269.6 Da    PI: 6.1403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00042946-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-164695255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +gr++AeIrdp     +   r +lg+f+taeeAa a++ a+++++g
  PSME_00042946-RA 46 RYRGVRRRP-WGRFAAEIRDP-----KakERRWLGTFDTAEEAAYAYDFAARSIRG 95
                      69*******.**********9.....335999*******************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-2746102IPR001471AP2/ERF domain
PfamPF008474.8E-104695IPR001471AP2/ERF domain
SMARTSM003801.0E-3146109IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2046103IPR016177DNA-binding domain
CDDcd000183.32E-2946102No hitNo description
PROSITE profilePS5103222.5146103IPR001471AP2/ERF domain
PRINTSPR003672.7E-94758IPR001471AP2/ERF domain
PRINTSPR003672.7E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVKPEFRDSA LKPQADSDNN GVDSPSLSAT CKLSEKQFKR GKEAGRYRGV RRRPWGRFAA  60
EIRDPKAKER RWLGTFDTAE EAAYAYDFAA RSIRGIKART NFIYVDQESC MIFSQPQSPA  120
GPGHSTVVAT DHIKTPFLQK HEKLQDSSAD CPWPDLSTIH GSYNVPKQQQ QNKQYSLNGG  180
YDILGDVGMS NYLNSSKNQT ESNNYRPVAR SSMPVFLPRD HQNTSSWHNM DQDDTDLDLK  240
LSKSTIDLPH DFPIPSSVSS SATASVLAKI PDHQTSFNNG TIMPTSMQLL FSKPVESLSF  300
LPFLEEPTSR VCSPVSSKNT LTSNLEHEFQ NLADYNTYSE SGLLEQIISG YLPLPARTSH  360
ISSPNNNTTL DYAVRLPQDS YSTFTPCTGI DSTGLVIRED LERLFEANYL GLYLNPEEQQ  420
AQQQQRQHED CKLNSNNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2141102971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-10DORNROSCHEN-like