PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043015-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 183aa    MW: 20232.8 Da    PI: 5.32
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043015-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.61.3e-3527125199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk++r+kC+++C lapyf  ++++kf  vh++FG+ +v kllk ++ e+r +a+ss+vyeA  r+rdPv+G++gvi++l++++++l+++
  PSME_00043015-RA  27 SCAACKTQRKKCTEKCLLAPYFRLDEAEKFLLVHRVFGNGHVNKLLKGIQAEQRGEAVSSMVYEATERLRDPVHGCLGVINDLRKKIAELESQ 119
                       6******************************************************************************************** PP

            DUF260  94 lallke 99 
                       la+ ++
  PSME_00043015-RA 120 LASKEA 125
                       998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.38626127IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3527123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MENAFTADGG EKMNNTACRP EPLPASSCAA CKTQRKKCTE KCLLAPYFRL DEAEKFLLVH  60
RVFGNGHVNK LLKGIQAEQR GEAVSSMVYE ATERLRDPVH GCLGVINDLR KKIAELESQL  120
ASKEAALANM SLQYDNLLTL VTGYHEGSGP NFYSAPLHES ENTDSSRSPT VVDDVELWDA  180
LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-272612010104LOB family transfactor Ramosa2.1
5ly0_B5e-272612010104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI92e-64B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-41LOB domain-containing protein 1