PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043046-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 137aa MW: 15562.2 Da PI: 7.2568

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043046-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	56	97	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L+el+P + sk Ka +L + ++Y++sLq PSME_00043046-RA 56 KARREKISERMKFLQELVPGC----SKVTGKAVMLDEITNYVQSLQ 97 78****************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.788	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	56	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	56	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-4	56	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.60E-7	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MHVILEILSC ETYQVLIQDE AQPIKEEQIT EAVDGLKGMK YKTVEGVKEK DDVKYKARRE 60 KISERMKFLQ ELVPGCSKVT GKAVMLDEIT NYVQSLQRQV QFLSMKLAAV NPRMEFNIEG 120 IIAKDVSPVS LQVLSKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113151	9e-94	BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020993044.1	1e-36	transcription factor bHLH49 isoform X1
Refseq	XP_020993049.1	1e-36	transcription factor bHLH49 isoform X1
Refseq	XP_025693910.1	1e-36	transcription factor bHLH49 isoform X1
Refseq	XP_025693919.1	1e-36	transcription factor bHLH49 isoform X1
Swissprot	Q9CAA9	1e-34	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A2K3MZR0	8e-36	A0A2K3MZR0_TRIPR; Transcription factor bHLH49-like protein
TrEMBL	A0A2U1NSX1	5e-36	A0A2U1NSX1_ARTAN; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
TrEMBL	S8CEH8	4e-36	S8CEH8_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_008807015.1	4e-35	(Phoenix dactylifera)
STRING	EFJ16603	8e-36	(Selaginella moellendorffii)
STRING	EFJ21812	9e-36	(Selaginella moellendorffii)
STRING	EFJ32544	8e-36	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-37	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]