PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043053-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 413aa    MW: 46771.1 Da    PI: 4.7489
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043053-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-15128179155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa a++ a+ +++g
  PSME_00043053-RA 128 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFSTQEEAATAYDIAAIEYRG 179
                       89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.009193IPR001471AP2/ERF domain
SMARTSM003808.4E-5399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-6319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-65794IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-66495IPR016177DNA-binding domain
CDDcd000183.31E-25128189No hitNo description
SuperFamilySSF541711.05E-17128189IPR016177DNA-binding domain
PfamPF008471.6E-10128179IPR001471AP2/ERF domain
SMARTSM003806.3E-27129193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18129188IPR001471AP2/ERF domain
PROSITE profilePS5103218.518129187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MFRHRWTGRY EAHLWDKNCW NEGQNKKGRQ GIMSFPPLCL VLKNTLQASK QQITEILMYV  60
PQSGAYDEEE AAAHTYDLAA LKYWGAETIL NFPLSTYTKE LEEMQSVSKE EYLASLRRRS  120
SGFSRGVSKY RGVARHHHNG RWEARIGRVL GNKYLYLGTF STQEEAATAY DIAAIEYRGL  180
NAVTNFDLSH YVNRLAPQKY TTKSDGHDAT VVVSNKVYGS SLIPGGVSTK TSNNDDNMTY  240
LQQPQPQPQP QPQQPPQLSW TPPKLERSNE EKESSNIAAD PTELELELEQ LIIESSSKFK  300
EMVEIGSNLS NTDDGHKPEE DAHTTEIANF EEELELFFST PTNNFLCSDA ELSINCPSVI  360
MHDNIFVQQD QMDLIPPLDI CNGNFLDLDQ DHSLLDPMSP FPNFVVRGCS MLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1170701e-156BT117070.1 Picea glauca clone GQ03812_D11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1U8JPW66e-94A0A1U8JPW6_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
STRINGGorai.009G008800.17e-94(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-74AP2 family protein