PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043058-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 177aa MW: 19915.8 Da PI: 8.7202

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043058-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	86	114	4	30
HHHH.HHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahne.rErrRRdriNsafeeLrellPk.a 30 ++n E++RR ++++ + +Lr+++Pk + PSME_00043058-RA 86 SKNLyTEKKRRMKLKETLLNLRSVVPKiN 114 555327********************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.25E-6	75	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-5	81	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTGLFEKLSG QSSSYSEPKT LTELNPSISV CSKLIATDHQ NWMDMDKNSG QFGWDDTDPE 60 IIGLNPVATQ AFNSNGGVVL QQRRTSKNLY TEKKRRMKLK ETLLNLRSVV PKINKVQEIH 120 NEIKVLSTSN RLDHHTQLTV EMIEPLTNPD CAISMKNLPD KLVKHGKILE VSTNISL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	97	KKRRMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LRN6	3e-23	B8LRN6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	3e-06	bHLH family protein