PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043118-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 422aa MW: 46963 Da PI: 9.9941

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043118-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	271	289	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++C+k Fs++ L++H++ PSME_00043118-RA 271 CKICNKEFSSQVVLESHLS 289 *****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.13E-5	182	223	No hit	No description
SMART	SM00451	0.0014	187	222	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	2.14E-8	258	300	No hit	No description
SMART	SM00451	0.0021	266	300	IPR003604	Zinc finger, U1-type
PROSITE profile	PS50157	9.058	269	298	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	271	293	IPR007087	Zinc finger, C2H2
Pfam	PF12874	9.3E-9	271	293	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
VVPGPSGRVN GFSQPMGRSI REPTGVPLWD PMRAGEPKHH QEVPRRGLIR RDHEVEWVPR 60 RELIRRDHEV EFFLREQDRL SSHAPFYQHR PRPQPQQIIA RNIDKITSST ARIAAQPQRI 120 TMPLERGDRL ATYRPRDSQQ IQNLQVHRKK QGLKHGSKKR TAKGLQPKLT ESDIPTTQND 180 NAPKILGSPG WCSLCNVDCG TKEVLHKYHV NGKKHQSKLK KLLVSGDGKM SVHKEVQDID 240 SSIAKRKRHM NEDGSLSSPK RQKLSILSLD CKICNKEFSS QVVLESHLSG KKHASQLKKL 300 GNSAASLEVN GDQSKKSVGV DGKQSEISKL VVVAENDAEA AGGEEEKTVL KANENAAEAA 360 GGEEEKTILK ANDDREIRDK SEEDDSKESA EPCEVGGKIN NSPRGKVEDV AVTTNVKVKV 420 ES

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

VVPGPSGRVN GFSQPMGRSI REPTGVPLWD PMRAGEPKHH QEVPRRGLIR RDHEVEWVPR  60
RELIRRDHEV EFFLREQDRL SSHAPFYQHR PRPQPQQIIA RNIDKITSST ARIAAQPQRI  120
TMPLERGDRL ATYRPRDSQQ IQNLQVHRKK QGLKHGSKKR TAKGLQPKLT ESDIPTTQND  180
NAPKILGSPG WCSLCNVDCG TKEVLHKYHV NGKKHQSKLK KLLVSGDGKM SVHKEVQDID  240
SSIAKRKRHM NEDGSLSSPK RQKLSILSLD CKICNKEFSS QVVLESHLSG KKHASQLKKL  300
GNSAASLEVN GDQSKKSVGV DGKQSEISKL VVVAENDAEA AGGEEEKTVL KANENAAEAA  360
GGEEEKTILK ANDDREIRDK SEEDDSKESA EPCEVGGKIN NSPRGKVEDV AVTTNVKVKV  420
ES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	159	KKQGLKHGSKKR