PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043131-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 289aa    MW: 32179.7 Da    PI: 5.9877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043131-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-172575155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GV  +++  +W A+    ++ g k k+++lg+++t+eeAa+a+++a++k++g
  PSME_00043131-RA 25 SKYRGV--RPQGRKWCAQ---TTNPGaKGKYIWLGTYDTEEEAARAYDEAARKIRG 75
                      89****..586677****...77768889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-172584IPR016177DNA-binding domain
PfamPF008471.4E-102575IPR001471AP2/ERF domain
CDDcd000181.19E-242585No hitNo description
PROSITE profilePS5103217.3322683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-212684IPR001471AP2/ERF domain
SMARTSM003805.7E-232689IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRGLATHPSK CREAVKSTGS RERKSKYRGV RPQGRKWCAQ TTNPGAKGKY IWLGTYDTEE  60
EAARAYDEAA RKIRGKRAKV NFDDDLPPPK RKVFKNSKNQ MTEDSSIPTD MQISSVQTVQ  120
LPYYPITNNF HMQRMPQHTN PNFPMVITPQ KVASEGQPPE SYTGSSNLNS DDSCFYFDDS  180
CYPEEVHIAR TLRISSSLNT TIEGAGADFI DVSTELIKGI SHQDGNSLLD DNVIKPKTSQ  240
EALESNSVEE SIMSELRELL GLEGDTENST GRVDTNGSYV HDISMPGTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-09ERF family protein