PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043147-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 647aa    MW: 70111.3 Da    PI: 7.52
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043147-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30371429259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  PSME_00043147-RA 371 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTVLVTTYEGSHNHP 429
                       7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-33355431IPR003657WRKY domain
SuperFamilySSF1182901.96E-27363431IPR003657WRKY domain
PROSITE profilePS5081129.7365431IPR003657WRKY domain
SMARTSM007743.8E-36370430IPR003657WRKY domain
PfamPF031065.2E-26372429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MEAVGLSIAG NGSYRELLDT FLKQKCRRKT DFMADARRFD KLGGIDLSVK LEETENIAEE  60
KLMRQREPEI EIKNGVVDFF SEKSSRGLGF EFRPTTGGVA PVLSSLGEGL RLGSQKSENK  120
DEGPSSSKGI SFSTGLQLLP ANTASDRSTV DDGMSPVRSS EPSNPEEAEP KSEVELNRMN  180
EENQRLRFML NYISKNYGNL QMHLMSVMQQ QPPSDKVEEK FNTSSAKSQD GVKVDAVAPV  240
QRQFLDLVPI SSHGTDSQHS LSSESLDDID QEAAAKSNNI EVLSKKRDLC TANSTDKARL  300
QQASSDRAAS PNRLNGQGQE KGKPDSPPDH DSWTANKAQK VPNKCAVDQT EATIRKARVS  360
VRARSEASMI SDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTVLVT  420
TYEGSHNHPL PPAATAMAST TSAAACMLLS GSTTSNDGGF NSSFMQAAAG SLMSCSPASM  480
ATISASAPFP TVTLDLTQNP NHNNMYQRPP SGFPMPLGGF QQFPSHPPQI FSHSLLNNSK  540
FAPLSGQQFD PQQQLPPYSG HPMQQQQQQQ QQQQTHMPVP ISQFKGPQSS LIDTVSAITA  600
DPNFTSALAA AITSIISGQP NNANSIPSQA LPGTARADNP ASAKLHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21357433176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1145290.0BT114529.1 Picea glauca clone GQ03516_F03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252466.11e-131PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A0C9QVA30.0A0A0C9QVA3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_6922_2664 transcribed RNA sequence
STRINGXP_010252466.11e-131(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-81WRKY family protein