PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043149-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 180aa    MW: 20019.7 Da    PI: 6.2323
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043149-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.91e-35331271100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck++r+kC+++Cvlapyfp+++p+kf  vhk++G+++v+kll++     r da+s++vyeA  r+rdPv+G+vgvi++lq+++++l++ 
  PSME_00043149-RA  33 PCAGCKIQRKKCSQNCVLAPYFPQDNPQKFVLVHKVYGNRHVIKLLEK-----RGDAVSCMVYEASQRLRDPVHGCVGVINDLQKKVAELQSR 120
                       7*********************************************98.....**************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00043149-RA 121 LASTQTE 127
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.66532128IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-3433125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
ASLVFEKKPP AHSDGTMANM SSDSKPEMWS TSPCAGCKIQ RKKCSQNCVL APYFPQDNPQ  60
KFVLVHKVYG NRHVIKLLEK RGDAVSCMVY EASQRLRDPV HGCVGVINDL QKKVAELQSR  120
LASTQTELAN ISMQHANLYT LITEGPADLH LYDGSALESE DSNVSEDGTD PMELWEPLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-31301288111LOB family transfactor Ramosa2.1
5ly0_B2e-31301288111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6781425e-90EF678142.1 Picea sitchensis clone WS02823_H17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597159.16e-45LOB domain-containing protein 1
TrEMBLB8LQI93e-83B8LQI9_PICSI; Uncharacterized protein
STRINGAES674102e-44(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-46LOB domain-containing protein 1