PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043188-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 48aa    MW: 5644.48 Da    PI: 4.8789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043188-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-09541644
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      ++E++l+  + ++lG + W++Ia +++ gRt+ ++k + 
  PSME_00043188-RA  5 EDEEDLISMLYNLLGQR-WALIAGRIP-GRTADEIKKYC 41
                      89*************99.*********.********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.45148IPR017930Myb domain
PfamPF002492.6E-8341IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-11340IPR009057Homeodomain-like
CDDcd001672.41E-5541No hitNo description
SuperFamilySSF466897.41E-7541IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 48 aa     Download sequence    Send to blast
MDFLEDEEDL ISMLYNLLGQ RWALIAGRIP GRTADEIKKY CSKRYASY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0821221e-59EF082122.1 Picea sitchensis clone WS02813_H08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417220.12e-18PREDICTED: MYB-like transcription factor ETC1 isoform X1
RefseqXP_009417221.12e-18PREDICTED: MYB-like transcription factor ETC1 isoform X2
TrEMBLA9NLI81e-24A9NLI8_PICSI; Uncharacterized protein
STRINGXP_006469704.11e-17(Citrus sinensis)
STRINGXP_006447522.12e-17(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.18e-15MYB_related family protein