PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043229-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LSD
Protein Properties Length: 242aa    MW: 26631.8 Da    PI: 7.5399
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043229-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD132.71.3e-102448125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      Cg C+tlL+Y+rG +sV+C++C tV
  PSME_00043229-RA 24 CGRCHTLLMYTRGETSVQCSCCSTV 48
                      ***********************99 PP
2zf-LSD125.32.5e-0895119125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg C+tlL+Y+ G  sV+C++C tV
  PSME_00043229-RA  95 CGRCHTLLMYTCGEISVQCSCCSTV 119
                       ***********************99 PP
3zf-LSD146.94.5e-15133157125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C t+L+YP+GApsV+CalC++V
  PSME_00043229-RA 133 CGNCFTTLMYPYGAPSVKCALCHFV 157
                       ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.0E-112150IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-92448IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.53E-62448IPR011031Multihaem cytochrome
TIGRFAMsTIGR010535.2E-892121IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-695119IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.53E-6113155IPR011031Multihaem cytochrome
TIGRFAMsTIGR010533.9E-11130160IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-14133157IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKVHQMFAVQ YAVPPGAEMA QLICGRCHTL LMYTRGETSV QCSCCSTVNL AIEANQVAHV  60
AESGSHYEEK DIQRYFDLQQ EYAVPPGAEM AQLICGRCHT LLMYTCGEIS VQCSCCSTVN  120
LAIEANQVAH VNCGNCFTTL MYPYGAPSVK CALCHFVTNV GQISNMRMPL LAQRPLAVAT  180
MAPASSSTRP TRSQMQTVVV ENPMIVNERG KMVSNVGTAG KYWFLNLSQR PKQIDSFKEI  240
NQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0717601e-130BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA.
GenBankEF0847061e-130EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225697.13e-57PREDICTED: protein LSD1
TrEMBLA9NTQ63e-65A9NTQ6_PICSI; Uncharacterized protein
STRINGXP_008225697.11e-56(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-43LSD family protein