PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043254-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

ERF

Protein Properties

Length: 1546aa MW: 170925 Da PI: 3.0807

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043254-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.5	2.1e-15	260	309	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIr p++ + r +lg+f+taeeAa a++ a+++++g PSME_00043254-RA 260 RYRGVRRRP-WGRFAAEIRNPKT---KERRWLGTFDTAEEAAYAYDFAARAMRG 309 69*****.******954...4999*******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.445	260	317	IPR001471	AP2/ERF domain
CDD	cd00018	2.00E-28	260	316	No hit	No description
Pfam	PF00847	2.9E-10	260	309	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.7E-27	260	316	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-32	260	323	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-19	260	317	IPR016177	DNA-binding domain
PRINTS	PR00367	2.8E-8	261	272	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-8	283	299	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1546 aa Download sequence Send to blast
STEAADIWVR AKSHDPYRFA CARTVGCRVT LAGNPHVPGR CRLQGLQLGP VIGIGTGSCC 60 IVFFSSVIGF CWGLLVGSEP VDTLEDQTKP VIPSSPDTNT QLTSPLEVPL IPSTLDTRSR 120 SADVLEDATD QIYHSSSPTT FDDLTKGQLK YIEDMEAIAK NSSISPAVTL TNSVVSGPPP 180 LTLDHYPSLP LNTSDSTSLP SHPSPAFCPI LEAAMGKPET RDSALKPQSD SDNNGDHFPS 240 FSASCKLSEK QFKRGKEAGR YRGVRRRPWG RFAAEIRNPK TKERRWLGTF DTAEEAAYAY 300 DFAARAMRGI KARTNFIYVD PESCMTFSQA QCQEDPGHNT VVATDIKSPF LPKHEELQDS 360 WAGCPWRDLS TIPGSYNIPK QQQFSLNGSS SMLGDVGMSN YLNSSKNQME SNNYKPVPRS 420 SMPVSLPRDH QNTSSWHNMS QDDTVLAMKL AKSTIDLTHD FSIPSSVSSS ATASVLAKVT 480 DNQTSFDNST IIPTSMQLPF LKPVESLSFL PFLEEPASRV CSPVSSKNTL TSNLEHEFQN 540 LADCNTYSES GLLEEIISGY LPLPARTSHT SNFSSPNNNI TLDYGVRQDP QESYSTPSPC 600 SAIDSSGLMI REDLARLVEA NDRDDDTDGD EDDDDYHDGD DDDDDDDDDG DDDVHDVDGD 660 DDEGDDDAED DDDDVDDDDD DDDGDDDVDD DDGDDDEDDD DDDDDGDDDD DDGDDDGDDD 720 DDGDDDIDVY DDDDEGGDDN DDDDDGDDDV DDVDVDDDDD DEDDDDYDDG DDDVDDVDVD 780 DDDDDDEDEV DDDEEEEDED DGDDHDVDDD DEDDDDVMMM MMMKMKMMKM IMMVMAIDDG 840 DGHGDDDDDD DDVDDDDDDD DDDDDDDDDG DDDVHDVDGD DDGHVDDDDD DDEGHADDGH 900 VDDDDDDEGH DDDGHVDDDD DDDDDDDEGD DDDDDDDDDD DDDVDVDDDD DDGDDDVEDV 960 DGDDDDHVDD DDDDDDDDDD DDGGDDDVDD DDDDGDDDVH DVDGDDDDDD DGDDDDDDDG 1020 DDDVHDVDGD DDGHVDDDDD DDEGDDDDDD GDDDDDDDDD EGDEEEEEDD DDDDDDDVDV 1080 DDDDDDGDDD VHDVDGNDDD DVDDDDDDDE EGDDEEEDDD DDDDDDEDDD HDDGDDDVDD 1140 DDNDGDDDVH DVDVDGDDDD HVVDDDDDDD DEGDDDDDDG NGDDDNDDDD DDDEGDDDDE 1200 DDEEDDEEEE DDDDDDDDVD DNDDDDGDDD VHDVDGDDDD DDADDDDEGD DDDDDDDDDD 1260 DDDGDDDVDD VDVDDDDDED DDDDDDGDDD VYDVDDDDDD EDDDDDDDDD DEDDHDDHGD 1320 DEDDDDGDGD DDDDDDDDDD EDVYDDDEDE DEDGDNGDDD GDDDDDDDDD DVDDDDDDED 1380 DEDGVDDDDD DDDDDDDDDG DNDVHDVDGD DDDEDDDDDE GDDDDEDDHD GDEDDDDDVD 1440 DDDDDDDNDD DDDDAGDDDD AGDDDVHDVD GDDDDHVDGD DDDENDDDDD DDEDDDDDVD 1500 DDDDDDDDDD DDAGDDDVHD VDGDDDDDVM MMMMMFMMLM VMMMMM

Sequence ? help Back to Top

Protein Sequence Length: 1546 aa Download sequence Send to blast

STEAADIWVR AKSHDPYRFA CARTVGCRVT LAGNPHVPGR CRLQGLQLGP VIGIGTGSCC  60
IVFFSSVIGF CWGLLVGSEP VDTLEDQTKP VIPSSPDTNT QLTSPLEVPL IPSTLDTRSR  120
SADVLEDATD QIYHSSSPTT FDDLTKGQLK YIEDMEAIAK NSSISPAVTL TNSVVSGPPP  180
LTLDHYPSLP LNTSDSTSLP SHPSPAFCPI LEAAMGKPET RDSALKPQSD SDNNGDHFPS  240
FSASCKLSEK QFKRGKEAGR YRGVRRRPWG RFAAEIRNPK TKERRWLGTF DTAEEAAYAY  300
DFAARAMRGI KARTNFIYVD PESCMTFSQA QCQEDPGHNT VVATDIKSPF LPKHEELQDS  360
WAGCPWRDLS TIPGSYNIPK QQQFSLNGSS SMLGDVGMSN YLNSSKNQME SNNYKPVPRS  420
SMPVSLPRDH QNTSSWHNMS QDDTVLAMKL AKSTIDLTHD FSIPSSVSSS ATASVLAKVT  480
DNQTSFDNST IIPTSMQLPF LKPVESLSFL PFLEEPASRV CSPVSSKNTL TSNLEHEFQN  540
LADCNTYSES GLLEEIISGY LPLPARTSHT SNFSSPNNNI TLDYGVRQDP QESYSTPSPC  600
SAIDSSGLMI REDLARLVEA NDRDDDTDGD EDDDDYHDGD DDDDDDDDDG DDDVHDVDGD  660
DDEGDDDAED DDDDVDDDDD DDDGDDDVDD DDGDDDEDDD DDDDDGDDDD DDGDDDGDDD  720
DDGDDDIDVY DDDDEGGDDN DDDDDGDDDV DDVDVDDDDD DEDDDDYDDG DDDVDDVDVD  780
DDDDDDEDEV DDDEEEEDED DGDDHDVDDD DEDDDDVMMM MMMKMKMMKM IMMVMAIDDG  840
DGHGDDDDDD DDVDDDDDDD DDDDDDDDDG DDDVHDVDGD DDGHVDDDDD DDEGHADDGH  900
VDDDDDDEGH DDDGHVDDDD DDDDDDDEGD DDDDDDDDDD DDDVDVDDDD DDGDDDVEDV  960
DGDDDDHVDD DDDDDDDDDD DDGGDDDVDD DDDDGDDDVH DVDGDDDDDD DGDDDDDDDG  1020
DDDVHDVDGD DDGHVDDDDD DDEGDDDDDD GDDDDDDDDD EGDEEEEEDD DDDDDDDVDV  1080
DDDDDDGDDD VHDVDGNDDD DVDDDDDDDE EGDDEEEDDD DDDDDDEDDD HDDGDDDVDD  1140
DDNDGDDDVH DVDVDGDDDD HVVDDDDDDD DEGDDDDDDG NGDDDNDDDD DDDEGDDDDE  1200
DDEEDDEEEE DDDDDDDDVD DNDDDDGDDD VHDVDGDDDD DDADDDDEGD DDDDDDDDDD  1260
DDDGDDDVDD VDVDDDDDED DDDDDDGDDD VYDVDDDDDD EDDDDDDDDD DEDDHDDHGD  1320
DEDDDDGDGD DDDDDDDDDD EDVYDDDEDE DEDGDNGDDD GDDDDDDDDD DVDDDDDDED  1380
DEDGVDDDDD DDDDDDDDDG DNDVHDVDGD DDDEDDDDDE GDDDDEDDHD GDEDDDDDVD  1440
DDDDDDDNDD DDDDAGDDDD AGDDDVHDVD GDDDDHVDGD DDDENDDDDD DDEDDDDDVD  1500
DDDDDDDDDD DDAGDDDVHD VDGDDDDDVM MMMMMFMMLM VMMMMM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	255	316	9	71	Ethylene-responsive transcription factor ERF096

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	9e-10	ERF family protein