PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043358-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 467aa MW: 51784.9 Da PI: 7.1835

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043358-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	82.6	5.2e-26	21	78	21	78
TT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 21 hkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +++Ce+hska++v++ g++qrf qqCsrfh l+efDe krsCr+ La+hn+rr+k+q+ PSME_00043358-RA 21 YHICEFHSKATSVVIGGVQQRFYQQCSRFHLLEEFDEVKRSCRKCLADHNRRRHKPQT 78 78*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	20.102	1	76	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.4E-19	20	75	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.1E-18	21	63	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.28E-23	21	81	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MPPLLSQFLK KQLKNSGCFT YHICEFHSKA TSVVIGGVQQ RFYQQCSRFH LLEEFDEVKR 60 SCRKCLADHN RRRHKPQTNT IVPIVSSAEA ATTLKVEDDD NNVSGSCNNT SRGTVQTSVA 120 ASASLVLKTE AQALLNAINT TTNNNPMLQQ PNSQKVPVAN QQYVQQQNGG GHKGPNLSLS 180 SPYVGMNLCN QRQTMAQDYS GLELALPWLR TTSDYGESSH RPPPAMDNIL HPIISHEKEN 240 VEAFSASSVQ NFLPLIGSMS SRELGSSQWM VGSSDSASSL EAGQQMFSLL EPAKHHNRTE 300 EQAQTARPVE YFSHRHQGGL NSKEPVDGNP EVKFSDMQNS LRPFGQSIYD GSMIGFTDEP 360 IELLGLVIPK SMPQVSGTIA VKSAFLMLFR PCEGCICLIE FWILDMIIIR AIPLLLNSTL 420 HFSIFCGVKS CNRSPILDNE APGLFQVFSF LSMNKQTQLF LMNNMLH

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MPPLLSQFLK KQLKNSGCFT YHICEFHSKA TSVVIGGVQQ RFYQQCSRFH LLEEFDEVKR  60
SCRKCLADHN RRRHKPQTNT IVPIVSSAEA ATTLKVEDDD NNVSGSCNNT SRGTVQTSVA  120
ASASLVLKTE AQALLNAINT TTNNNPMLQQ PNSQKVPVAN QQYVQQQNGG GHKGPNLSLS  180
SPYVGMNLCN QRQTMAQDYS GLELALPWLR TTSDYGESSH RPPPAMDNIL HPIISHEKEN  240
VEAFSASSVQ NFLPLIGSMS SRELGSSQWM VGSSDSASSL EAGQQMFSLL EPAKHHNRTE  300
EQAQTARPVE YFSHRHQGGL NSKEPVDGNP EVKFSDMQNS LRPFGQSIYD GSMIGFTDEP  360
IELLGLVIPK SMPQVSGTIA VKSAFLMLFR PCEGCICLIE FWILDMIIIR AIPLLLNSTL  420
HFSIFCGVKS CNRSPILDNE APGLFQVFSF LSMNKQTQLF LMNNMLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-18	21	75	30	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	4e-21	squamosa promoter-binding protein-like 12