PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043380-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

TALE

Protein Properties

Length: 964aa MW: 106106 Da PI: 6.1797

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043380-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	664	701	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + PSME_00043380-RA 664 FEHflHPYPTDADKHILAKQTGLTRSQVSNWFINARVR 701 554459******************************88 PP
2	BELL	113.7	1e-36	526	596	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r elq++kakL+s+l+eVd+rY+ y++q+q v+ssFe + lg+a+pYt+lAlka+SrhFrcLkda+++q+ PSME_00043380-RA 526 RFELQRRKAKLVSMLDEVDRRYRNYCDQMQLVVSSFESASTLGAAAPYTALALKAMSRHFRCLKDAVTGQL 596 779*****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.0E-52	451	594	IPR006563	POX domain
Pfam	PF07526	1.2E-46	457	593	IPR006563	POX domain
PROSITE profile	PS50071	12.39	642	705	IPR001356	Homeobox domain
SMART	SM00389	5.6E-10	645	709	IPR001356	Homeobox domain
CDD	cd00086	5.51E-13	645	706	No hit	No description
SuperFamily	SSF46689	4.28E-17	646	711	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	648	711	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	662	701	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
GEIHESLLLV DEDEEGSNGS VQSWGLRLSR LLLGVEAGKA FEFSCQQTAA AADWQIYIAD 60 GVAVELLEWT IKPVFIRLEL TYFLLGFLGV SRGIELLAFS SKNQFLDHNS EAEASSRSSV 120 IGTSYQGLGN PGGNLGNWKS FNVPQNRSNT VWAAPSIVVP NNMQQQQQHH HGGLVYNSGQ 180 VIPNPIVVAR GGSMQVGSSG DIRKGDMEVA SQNPHHQTDH GTHLFLMNPK YPNEFPEGTS 240 TAAANMTEIR PTNGLNPPGF EAQKNILEFP HFPTQIPTII SEASPSLRDP SHGTGSDLPG 300 SGNMQHSQLM LAQFNNTLNW ANRYSGSQPW NREQFIENKV DESFRSEYSS KGQDGSGQRL 360 SLSLSSHQPS EMHLQDIANQ TNVLQFGGDA KSKLGDLFNS AHGTTTDGLA YNISSYSRNG 420 IPGKGFMDSI QGGGRSAILQ YMKDGSTGAF AGYGLGLKNS RYLKAAQEIL YEFCNVGRGI 480 ETKTSPKQKL SMEVNVIPGS SSSRSHEFGA KTETGMMNQP FYPGDRFELQ RRKAKLVSML 540 DEVDRRYRNY CDQMQLVVSS FESASTLGAA APYTALALKA MSRHFRCLKD AVTGQLQVTI 600 KALGEKGSVV PGTSRGETPR LGFLERSIRQ QRAFHHLGLM EQHPWRPQRG LPERSVSVLR 660 AWLFEHFLHP YPTDADKHIL AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YIEETKEEKV 720 DQVGQNAEAE AERSTGTNND ENTMFNSGGA DNKCTANSEE AAFKLDHSSS TTSQTGQADI 780 ISSGNVTLHL QSKDPEMAVA RETSESLSSM NTSHEGDMKL DAAPGYNIFE QDKGFRNELY 840 ASKFQTAGHT GMSVDFSSYN NTTTSTTVAA YSHGDLTPRQ FANSGVSLTL GLRHSGGLSY 900 NPLNEQKYDN NIYFSRVQDD ADPGSQYSML DNEVSPGNGF MQEQDIEYRN YIVNGSRLLH 960 DFVG

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

GEIHESLLLV DEDEEGSNGS VQSWGLRLSR LLLGVEAGKA FEFSCQQTAA AADWQIYIAD  60
GVAVELLEWT IKPVFIRLEL TYFLLGFLGV SRGIELLAFS SKNQFLDHNS EAEASSRSSV  120
IGTSYQGLGN PGGNLGNWKS FNVPQNRSNT VWAAPSIVVP NNMQQQQQHH HGGLVYNSGQ  180
VIPNPIVVAR GGSMQVGSSG DIRKGDMEVA SQNPHHQTDH GTHLFLMNPK YPNEFPEGTS  240
TAAANMTEIR PTNGLNPPGF EAQKNILEFP HFPTQIPTII SEASPSLRDP SHGTGSDLPG  300
SGNMQHSQLM LAQFNNTLNW ANRYSGSQPW NREQFIENKV DESFRSEYSS KGQDGSGQRL  360
SLSLSSHQPS EMHLQDIANQ TNVLQFGGDA KSKLGDLFNS AHGTTTDGLA YNISSYSRNG  420
IPGKGFMDSI QGGGRSAILQ YMKDGSTGAF AGYGLGLKNS RYLKAAQEIL YEFCNVGRGI  480
ETKTSPKQKL SMEVNVIPGS SSSRSHEFGA KTETGMMNQP FYPGDRFELQ RRKAKLVSML  540
DEVDRRYRNY CDQMQLVVSS FESASTLGAA APYTALALKA MSRHFRCLKD AVTGQLQVTI  600
KALGEKGSVV PGTSRGETPR LGFLERSIRQ QRAFHHLGLM EQHPWRPQRG LPERSVSVLR  660
AWLFEHFLHP YPTDADKHIL AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YIEETKEEKV  720
DQVGQNAEAE AERSTGTNND ENTMFNSGGA DNKCTANSEE AAFKLDHSSS TTSQTGQADI  780
ISSGNVTLHL QSKDPEMAVA RETSESLSSM NTSHEGDMKL DAAPGYNIFE QDKGFRNELY  840
ASKFQTAGHT GMSVDFSSYN NTTTSTTVAA YSHGDLTPRQ FANSGVSLTL GLRHSGGLSY  900
NPLNEQKYDN NIYFSRVQDD ADPGSQYSML DNEVSPGNGF MQEQDIEYRN YIVNGSRLLH  960
DFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	4e-16	651	708	1	58	Homeobox protein Meis1
4xrs_B	4e-16	651	708	1	58	Homeobox protein Meis1
5bng_A	4e-16	651	709	1	59	Homeobox protein Meis2
5bng_B	4e-16	651	709	1	59	Homeobox protein Meis2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103397	0.0	BT103397.1 Picea glauca clone GQ02512_F23 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	3e-90	BEL1-like homeodomain 4