PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043508-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 327aa    MW: 35582.7 Da    PI: 8.7784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043508-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10211259355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka iL + ++Y++sLq
  PSME_00043508-RA 211 NSHSLAERVRREKISERMKFLQDLVPGC----SKATGKAVILDEIINYVQSLQ 259
                       58*************************9....7779****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-17206277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-11206263No hitNo description
PROSITE profilePS5088815.682208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17209276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7211259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
RAARLSCFGV GGGSLNLSES AGAPFHRSVI DNSAMSRIPR PNMAELTKVS DTSLSKEEVC  60
AAETGVRKAG RLSRSSTPGH GTSGNESDDA EVSTAHEESS SSDQNTSEAA PNSFNGRKRK  120
QMQKDKGKDF ASLQAEKETH ITEVVDGLKG MKYKTVEGVK EKDDVKYKVE QNASAKTGEG  180
SPKQAKDNIQ TSEPPKEDYI HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK  240
ATGKAVILDE IINYVQSLQR QVEFLSMKLP AVNPRMEFNV EGILAKDMLQ SQGSSPTMVF  300
ASDTSTSYPQ RHQPQQGLVQ IGTEGHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131510.0BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.15e-84transcription factor bHLH78
TrEMBLB8LLM21e-107B8LLM2_PICSI; Uncharacterized protein
STRINGERN100312e-83(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-61bHLH family protein