PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00043556-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 190aa MW: 21176 Da PI: 5.2869

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00043556-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	34.1	7.7e-11	8	38	1	31
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfa 31 +Ca+Ck++++kC+++Cvlapyfp ++p kf PSME_00043556-RA 8 RCAGCKIQKKKCSEKCVLAPYFPLNNPGKFM 38 6************************999885 PP
2	DUF260	52.8	1.2e-16	33	91	41	99
DUF260 41 nvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 n k++ +lp e+r da++s+vyeA r++dPv+G++gvi++lq+++++l+++la+ k+ PSME_00043556-RA 33 NPGKFMLNLPAEQRGDAVNSMVYEASQRIQDPVHGCAGVINDLQNKVAELQSQLASSKT 91 5668999***********************************************98876 PP
3	DUF260	42.7	1.6e-13	91	145	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++l++e+++da+s +vye+ r +dPv+G+vgvi++l++++e+++ +la++++e PSME_00043556-RA 91 TEELHTEHKDDAVSNMVYESSQRCKDPVHGCVGVINDLKNKVEEVELQLASTQAE 145 578999*******************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.736	7	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-8	8	38	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-14	36	89	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-10	92	143	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLERQTRCA GCKIQKKKCS EKCVLAPYFP LNNPGKFMLN LPAEQRGDAV NSMVYEASQR 60 IQDPVHGCAG VINDLQNKVA ELQSQLASSK TEELHTEHKD DAVSNMVYES SQRCKDPVHG 120 CVGVINDLKN KVEEVELQLA STQAELANMA MQHGNLLTII DRYHEGSIVK SHPPALDDVD 180 SMELWDPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-22	9	94	12	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-22	9	94	12	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LQI9	3e-46	B8LQI9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-35	LOB domain-containing protein 1