PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043707-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 175aa    MW: 19680.2 Da    PI: 10.7634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043707-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-06148173530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h+++Er RR+ri +++  L+el+P++
  PSME_00043707-RA 148 HSIAERLRRERIAERMKALQELVPNS 173
                       99**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.72E-7141174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.306143175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-6146174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.39E-5147175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPSGIGGQGL NSQENEGHAG EHMQYSNYDE SQFLASRPEI RTSEGCSHRS SDHRGVFGRP  60
AKTSIRRSHK NTSMIRSDSF LFSLYLCKLF LFLTVCLWSL FQSGQVPMQG YGRMPQPQHQ  120
NPPPTGVGAA PPVRPRVRAR RGHATDPHSI AERLRRERIA ERMKALQELV PNSNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150438e-98BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.