PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00043914-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 482aa    MW: 53953.3 Da    PI: 6.7175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00043914-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83e-143381254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ rgr++AeI dp++   + r +lg++g aeeAa a++ a++++ 
  PSME_00043914-RA 33 RYRGVRRRP-RGRFAAEIGDPKT---KERRWLGTYGIAEEAACAYDFAARAMS 81
                      69*******.8*********954...4999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-233389IPR001471AP2/ERF domain
PROSITE profilePS5103219.1243390IPR001471AP2/ERF domain
PfamPF008478.1E-93382IPR001471AP2/ERF domain
SMARTSM003807.0E-273396IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-163390IPR016177DNA-binding domain
PRINTSPR003672.2E-53445IPR001471AP2/ERF domain
CDDcd000185.02E-144089No hitNo description
PRINTSPR003672.2E-55672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MKSQQQSELQ KNESLSPNKL SEKQFKRGKE AGRYRGVRRR PRGRFAAEIG DPKTKERRWL  60
GTYGIAEEAA CAYDFAARAM SGIKARTNFI YLNSEHCMLS TATPPASLTS STFPTNVNDP  120
FSHKPQKLQD SWLDCLWRDS STTRPGPCNE AKQQQQKQQF SVNGGYNMLG NTVSSWRPSX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXGAGSS SVVPVSLPRD HHSINASTWQ  240
NLPLADPLLL SLSKNTIDHT HRSTIPFPVS SSTTCSSVTK INDHKPAFNN NITITPENAI  300
PLSNLVESVY FLPCSEEPGS EVCSPVSPYS YTLSCNVEHQ FQNLADSNGH SDLGLLDQII  360
SGYLPMSVSA TSVCIPKYFS NNNTLNCAVC VPQENYSTIT PTCTGFNTTD HIMEDLEWFI  420
ETNYIGLYCN PEAQQQPQDQ QQQLEANNFN STHFSAPSPY TDYLFSMPPI SDAQMLLRKF  480
YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-152889971Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-08ERF family protein